Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A2P12110 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL6A2P12110 LINC00602-201ENST00000629776 2065 ntBASIC17.71■□□□□ 0.43
COL6A2P12110 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A2P12110 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
COL6A2P12110 KRT89P-201ENST00000620027 1478 ntBASIC17.71■□□□□ 0.43
COL6A2P12110 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 AC008894.3-201ENST00000624324 3103 ntBASIC17.71■□□□□ 0.43
COL6A2P12110 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
COL6A2P12110 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL6A2P12110 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
COL6A2P12110 DDX43P3-201ENST00000441064 443 ntBASIC17.71■□□□□ 0.43
COL6A2P12110 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A2P12110 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A2P12110 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.71■□□□□ 0.43
COL6A2P12110 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.71■□□□□ 0.43
COL6A2P12110 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL6A2P12110 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A2P12110 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A2P12110 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
COL6A2P12110 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL6A2P12110 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.71■□□□□ 0.43
COL6A2P12110 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL6A2P12110 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A2P12110 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A2P12110 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A2P12110 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A2P12110 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
COL6A2P12110 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL6A2P12110 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.7■□□□□ 0.42
COL6A2P12110 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 MMP23A-201ENST00000234610 1017 ntBASIC17.7■□□□□ 0.42
COL6A2P12110 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.7■□□□□ 0.42
COL6A2P12110 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 KRT18P65-201ENST00000439811 1286 ntBASIC17.7■□□□□ 0.42
COL6A2P12110 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A2P12110 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A2P12110 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.7■□□□□ 0.42
COL6A2P12110 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.7■□□□□ 0.42
COL6A2P12110 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL6A2P12110 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL6A2P12110 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.7■□□□□ 0.42
COL6A2P12110 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL6A2P12110 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A2P12110 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A2P12110 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A2P12110 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A2P12110 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A2P12110 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A2P12110 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A2P12110 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A2P12110 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.69■□□□□ 0.42
COL6A2P12110 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 MIR4497-201ENST00000583208 89 ntBASIC17.69■□□□□ 0.42
COL6A2P12110 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.69■□□□□ 0.42
COL6A2P12110 AL157888.1-201ENST00000631930 593 ntBASIC17.69■□□□□ 0.42
COL6A2P12110 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 KRT8P9-201ENST00000558927 1449 ntBASIC17.69■□□□□ 0.42
COL6A2P12110 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL6A2P12110 AP001094.4-201ENST00000579008 2176 ntBASIC17.69■□□□□ 0.42
COL6A2P12110 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL6A2P12110 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A2P12110 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL6A2P12110 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms