Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC4P09017 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HOXC4P09017 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
HOXC4P09017 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.41■□□□□ 0.38
HOXC4P09017 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HOXC4P09017 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HOXC4P09017 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.41■□□□□ 0.38
HOXC4P09017 SPDYE21P-201ENST00000413323 827 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 HNRNPDP1-201ENST00000439535 754 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 AC079776.4-201ENST00000511039 504 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.41■□□□□ 0.38
HOXC4P09017 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.41■□□□□ 0.38
HOXC4P09017 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.41■□□□□ 0.38
HOXC4P09017 AC025062.2-201ENST00000605477 670 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 AC019129.2-201ENST00000609837 1235 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
HOXC4P09017 AC073592.5-201ENST00000624854 528 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 AL022326.1-202ENST00000641533 845 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.41■□□□□ 0.38
HOXC4P09017 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.41■□□□□ 0.38
HOXC4P09017 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 AP000997.3-201ENST00000623333 2250 ntBASIC17.41■□□□□ 0.38
HOXC4P09017 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HOXC4P09017 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
HOXC4P09017 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
HOXC4P09017 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.4■□□□□ 0.38
HOXC4P09017 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXC4P09017 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.4■□□□□ 0.38
HOXC4P09017 MTDHP4-201ENST00000600287 670 ntBASIC17.4■□□□□ 0.38
HOXC4P09017 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.4■□□□□ 0.38
HOXC4P09017 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 BICD1-207ENST00000551848 1962 ntBASIC17.4■□□□□ 0.38
HOXC4P09017 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.4■□□□□ 0.38
HOXC4P09017 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HOXC4P09017 AC138028.4-201ENST00000564984 1845 ntBASIC17.4■□□□□ 0.38
HOXC4P09017 AC009949.1-201ENST00000623048 1830 ntBASIC17.4■□□□□ 0.38
HOXC4P09017 AL020996.1-203ENST00000536896 2307 ntBASIC17.39■□□□□ 0.38
HOXC4P09017 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HOXC4P09017 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HOXC4P09017 AC009113.1-201ENST00000570267 2443 ntBASIC17.39■□□□□ 0.37
HOXC4P09017 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HOXC4P09017 AC087289.5-201ENST00000586076 3175 ntBASIC17.39■□□□□ 0.37
HOXC4P09017 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.39■□□□□ 0.37
HOXC4P09017 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 AL590627.1-203ENST00000421194 1026 ntBASIC17.39■□□□□ 0.37
HOXC4P09017 AC002558.1-201ENST00000488906 803 ntBASIC17.39■□□□□ 0.37
HOXC4P09017 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HOXC4P09017 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.39■□□□□ 0.37
HOXC4P09017 AC139887.3-201ENST00000568585 713 ntBASIC17.39■□□□□ 0.37
HOXC4P09017 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms