Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.57■■□□□ 1.36
COL3A1P02461 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC23.56■■□□□ 1.36
COL3A1P02461 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 MED22-202ENST00000371999 987 ntTSL 3 BASIC23.56■■□□□ 1.36
COL3A1P02461 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC23.56■■□□□ 1.36
COL3A1P02461 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 FAM197Y8-203ENST00000450145 560 ntBASIC23.56■■□□□ 1.36
COL3A1P02461 AC002558.1-201ENST00000488906 803 ntBASIC23.56■■□□□ 1.36
COL3A1P02461 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC23.56■■□□□ 1.36
COL3A1P02461 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
COL3A1P02461 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.56■■□□□ 1.36
COL3A1P02461 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC23.56■■□□□ 1.36
COL3A1P02461 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC23.56■■□□□ 1.36
COL3A1P02461 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL3A1P02461 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
COL3A1P02461 AP000347.1-202ENST00000435868 847 ntBASIC23.56■■□□□ 1.36
COL3A1P02461 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC23.56■■□□□ 1.36
COL3A1P02461 AL662844.1-201ENST00000546340 181 ntBASIC23.56■■□□□ 1.36
COL3A1P02461 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.56■■□□□ 1.36
COL3A1P02461 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC23.56■■□□□ 1.36
COL3A1P02461 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC23.56■■□□□ 1.36
COL3A1P02461 PNMT-203ENST00000581428 677 ntTSL 2 BASIC23.56■■□□□ 1.36
COL3A1P02461 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
COL3A1P02461 AL356309.3-201ENST00000624132 1934 ntBASIC23.55■■□□□ 1.36
COL3A1P02461 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL3A1P02461 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC23.55■■□□□ 1.36
COL3A1P02461 CD276-201ENST00000318424 2738 ntTSL 5 BASIC23.55■■□□□ 1.36
COL3A1P02461 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC23.55■■□□□ 1.36
COL3A1P02461 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.55■■□□□ 1.36
COL3A1P02461 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 STK25P1-201ENST00000585406 838 ntBASIC23.55■■□□□ 1.36
COL3A1P02461 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC23.55■■□□□ 1.36
COL3A1P02461 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC23.55■■□□□ 1.36
COL3A1P02461 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL3A1P02461 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC23.55■■□□□ 1.36
COL3A1P02461 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC23.54■■□□□ 1.36
COL3A1P02461 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC23.54■■□□□ 1.36
COL3A1P02461 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC23.54■■□□□ 1.36
COL3A1P02461 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL3A1P02461 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC23.54■■□□□ 1.36
COL3A1P02461 SCARNA2-201ENST00000458748 420 ntBASIC23.54■■□□□ 1.36
COL3A1P02461 AC012640.2-201ENST00000561606 901 ntBASIC23.54■■□□□ 1.36
COL3A1P02461 IRF8-202ENST00000562492 946 ntTSL 3 BASIC23.54■■□□□ 1.36
COL3A1P02461 NKAPP1-205ENST00000585790 367 ntBASIC23.54■■□□□ 1.36
COL3A1P02461 AC116407.2-201ENST00000613639 860 ntBASIC23.54■■□□□ 1.36
COL3A1P02461 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL3A1P02461 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL3A1P02461 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
COL3A1P02461 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL3A1P02461 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC23.54■■□□□ 1.36
COL3A1P02461 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL3A1P02461 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL3A1P02461 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC23.53■■□□□ 1.36
COL3A1P02461 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 HIST2H3DP1-201ENST00000401004 416 ntBASIC23.53■■□□□ 1.36
COL3A1P02461 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC23.53■■□□□ 1.36
COL3A1P02461 AC103564.2-201ENST00000432853 1299 ntBASIC23.53■■□□□ 1.36
COL3A1P02461 SLC25A6P5-201ENST00000435663 894 ntBASIC23.53■■□□□ 1.36
COL3A1P02461 BX005266.1-201ENST00000473402 457 ntBASIC23.53■■□□□ 1.36
COL3A1P02461 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC23.53■■□□□ 1.36
COL3A1P02461 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 COX5A-204ENST00000567270 579 ntTSL 3 BASIC23.53■■□□□ 1.36
COL3A1P02461 RNF151-202ENST00000569210 853 ntTSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 AC109462.3-201ENST00000573934 613 ntBASIC23.53■■□□□ 1.36
COL3A1P02461 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL3A1P02461 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.53■■□□□ 1.36
COL3A1P02461 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
COL3A1P02461 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
COL3A1P02461 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms