Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LDB3O75112 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.87■□□□□ 0.29
LDB3O75112 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 AP002383.4-201ENST00000442518 975 ntBASIC16.87■□□□□ 0.29
LDB3O75112 MTCL1P1-201ENST00000446207 792 ntBASIC16.87■□□□□ 0.29
LDB3O75112 RN7SL606P-201ENST00000472779 293 ntBASIC16.87■□□□□ 0.29
LDB3O75112 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 AC112698.1-201ENST00000510299 916 ntBASIC16.87■□□□□ 0.29
LDB3O75112 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.87■□□□□ 0.29
LDB3O75112 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LDB3O75112 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.87■□□□□ 0.29
LDB3O75112 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LDB3O75112 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LDB3O75112 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.86■□□□□ 0.29
LDB3O75112 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LDB3O75112 AP002414.4-201ENST00000589764 1148 ntBASIC16.86■□□□□ 0.29
LDB3O75112 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
LDB3O75112 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LDB3O75112 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LDB3O75112 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
LDB3O75112 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LDB3O75112 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.85■□□□□ 0.29
LDB3O75112 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.85■□□□□ 0.29
LDB3O75112 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.85■□□□□ 0.29
LDB3O75112 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LDB3O75112 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
LDB3O75112 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.85■□□□□ 0.29
LDB3O75112 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LDB3O75112 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.85■□□□□ 0.29
LDB3O75112 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.84■□□□□ 0.29
LDB3O75112 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LDB3O75112 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.84■□□□□ 0.29
LDB3O75112 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDB3O75112 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.84■□□□□ 0.29
LDB3O75112 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.84■□□□□ 0.29
LDB3O75112 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.84■□□□□ 0.29
LDB3O75112 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.84■□□□□ 0.29
LDB3O75112 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.84■□□□□ 0.29
LDB3O75112 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms