Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
SDCBPO00560 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.27■□□□□ 0.04
SDCBPO00560 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.27■□□□□ 0.04
SDCBPO00560 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC15.27■□□□□ 0.04
SDCBPO00560 BX088651.1-201ENST00000540551 451 ntBASIC15.27■□□□□ 0.04
SDCBPO00560 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.27■□□□□ 0.04
SDCBPO00560 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.27■□□□□ 0.04
SDCBPO00560 AL023803.3-201ENST00000615559 522 ntBASIC15.27■□□□□ 0.04
SDCBPO00560 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SDCBPO00560 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.27■□□□□ 0.03
SDCBPO00560 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.27■□□□□ 0.03
SDCBPO00560 SDHAP2-201ENST00000455183 2001 ntBASIC15.27■□□□□ 0.03
SDCBPO00560 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
SDCBPO00560 AC124067.4-201ENST00000519691 2379 ntBASIC15.27■□□□□ 0.03
SDCBPO00560 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDCBPO00560 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDCBPO00560 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
SDCBPO00560 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.27■□□□□ 0.03
SDCBPO00560 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDCBPO00560 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDCBPO00560 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
SDCBPO00560 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
SDCBPO00560 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SDCBPO00560 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.26■□□□□ 0.03
SDCBPO00560 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.26■□□□□ 0.03
SDCBPO00560 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.26■□□□□ 0.03
SDCBPO00560 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC15.26■□□□□ 0.03
SDCBPO00560 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.26■□□□□ 0.03
SDCBPO00560 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.26■□□□□ 0.03
SDCBPO00560 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.26■□□□□ 0.03
SDCBPO00560 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.26■□□□□ 0.03
SDCBPO00560 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
SDCBPO00560 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.26■□□□□ 0.03
SDCBPO00560 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.26■□□□□ 0.03
SDCBPO00560 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.26■□□□□ 0.03
SDCBPO00560 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
SDCBPO00560 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SDCBPO00560 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
SDCBPO00560 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SDCBPO00560 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.25■□□□□ 0.03
SDCBPO00560 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SDCBPO00560 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 KRT18P55-202ENST00000578578 1546 ntBASIC15.25■□□□□ 0.03
SDCBPO00560 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
SDCBPO00560 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 AL023806.1-201ENST00000603994 1649 ntBASIC15.25■□□□□ 0.03
SDCBPO00560 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SDCBPO00560 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SDCBPO00560 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.24■□□□□ 0.03
SDCBPO00560 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.24■□□□□ 0.03
SDCBPO00560 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SDCBPO00560 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms