Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 AC093010.1-201ENST00000473625 1624 ntBASIC13.13□□□□□ -0.31
SMKR1H3BMG3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 KRT8P50-201ENST00000562022 1438 ntBASIC13.13□□□□□ -0.31
SMKR1H3BMG3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC13.13□□□□□ -0.31
SMKR1H3BMG3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 AL109659.2-201ENST00000606809 1674 ntBASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SMKR1H3BMG3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 PPP1R14BP2-201ENST00000426284 444 ntBASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 MYC-209ENST00000641252 345 ntBASIC13.11□□□□□ -0.31
SMKR1H3BMG3 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 SDHAP2-201ENST00000455183 2001 ntBASIC13.11□□□□□ -0.31
SMKR1H3BMG3 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.11□□□□□ -0.31
SMKR1H3BMG3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SMKR1H3BMG3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms