Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AD001527.2-201ENST00000622994 785 ntBASIC13.77□□□□□ -0.21
COL6A5A8TX70 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 UBQLN4P1-201ENST00000461599 1801 ntBASIC13.77□□□□□ -0.21
COL6A5A8TX70 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 AC002056.1-201ENST00000395613 760 ntBASIC13.77□□□□□ -0.21
COL6A5A8TX70 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.77□□□□□ -0.21
COL6A5A8TX70 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A5A8TX70 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 AC132938.5-201ENST00000624980 1813 ntBASIC13.76□□□□□ -0.21
COL6A5A8TX70 USP48-205ENST00000421625 2818 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 AC138969.3-201ENST00000546612 1459 ntBASIC13.76□□□□□ -0.21
COL6A5A8TX70 AC138932.2-201ENST00000548268 1459 ntBASIC13.76□□□□□ -0.21
COL6A5A8TX70 AC126755.4-201ENST00000549796 1459 ntBASIC13.76□□□□□ -0.21
COL6A5A8TX70 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 AL020989.1-201ENST00000422979 469 ntBASIC13.76□□□□□ -0.21
COL6A5A8TX70 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL6A5A8TX70 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A5A8TX70 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 USP39-204ENST00000409766 2033 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 AC099778.1-201ENST00000568593 1911 ntBASIC13.75□□□□□ -0.21
COL6A5A8TX70 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A5A8TX70 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.75□□□□□ -0.21
COL6A5A8TX70 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A5A8TX70 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
COL6A5A8TX70 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A5A8TX70 TSSK5P-201ENST00000423978 907 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 AC122714.2-201ENST00000502787 707 ntBASIC13.74□□□□□ -0.21
COL6A5A8TX70 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms