Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC003957.1-201ENST00000625108 2673 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC022494.1-201ENST00000466044 728 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC096734.2-201ENST00000562054 433 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 LINC02560-201ENST00000596379 459 ntBASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL6A6A6NMZ7 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 MIR149-201ENST00000384879 89 ntBASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 KRT18P32-201ENST00000424695 1287 ntBASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AC073592.5-201ENST00000624854 528 ntBASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AC007064.4-201ENST00000637740 555 ntBASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.06■□□□□ 0.16
COL6A6A6NMZ7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 AL805961.1-202ENST00000641562 540 ntBASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 DUX4L27-201ENST00000554796 1261 ntBASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 AC068587.9-201ENST00000641814 219 ntBASIC16.05■□□□□ 0.16
COL6A6A6NMZ7 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 INGX-202ENST00000489074 768 ntBASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms