Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS54Q9P1Q0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 CHCHD2P8-201ENST00000429873 447 ntBASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 AP002383.4-201ENST00000442518 975 ntBASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 TSSC2-201ENST00000450217 709 ntBASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS54Q9P1Q0 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 AC134043.2-201ENST00000624206 2238 ntBASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 AC090616.6-201ENST00000582640 721 ntBASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS54Q9P1Q0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
VPS54Q9P1Q0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 SLC25A6P5-201ENST00000435663 894 ntBASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS54Q9P1Q0 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 AC026471.1-201ENST00000564629 3026 ntBASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 AC009949.1-201ENST00000623048 1830 ntBASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 AC091607.1-201ENST00000490318 1060 ntBASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 AC069148.1-201ENST00000608741 768 ntBASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.63■□□□□ 0.89
VPS54Q9P1Q0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms