Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 AC009154.2-201ENST00000621177 724 ntBASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 AC117500.6-201ENST00000624871 588 ntBASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.93■□□□□ 0.46
TM9SF3Q9HD45 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 AC018712.1-201ENST00000455767 687 ntBASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 FGFR3P6-201ENST00000457012 610 ntBASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 RNPS1P1-201ENST00000507437 918 ntBASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 AC009533.2-201ENST00000543664 586 ntBASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TM9SF3Q9HD45 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 AC243591.1-201ENST00000452967 1364 ntBASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RBM17P3-201ENST00000417687 1192 ntBASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 MTCL1P1-201ENST00000446207 792 ntBASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 AC073648.2-201ENST00000510116 352 ntBASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 MTDHP3-201ENST00000594186 672 ntBASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TM9SF3Q9HD45 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 BICD1-207ENST00000551848 1962 ntBASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TM9SF3Q9HD45 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms