Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PCDHB18P-201ENST00000524813 2368 ntBASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 TSPY22P-201ENST00000427496 604 ntBASIC13.88□□□□□ -0.19
CCDC140Q96MF4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AC112698.1-201ENST00000510299 916 ntBASIC13.88□□□□□ -0.19
CCDC140Q96MF4 FAM86EP-206ENST00000510506 987 ntBASIC13.88□□□□□ -0.19
CCDC140Q96MF4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AC011498.5-201ENST00000592027 486 ntBASIC13.88□□□□□ -0.19
CCDC140Q96MF4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CCDC140Q96MF4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 FXN-203ENST00000396366 922 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 MTCL1P1-201ENST00000446207 792 ntBASIC13.87□□□□□ -0.19
CCDC140Q96MF4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 AC068472.1-201ENST00000474589 881 ntBASIC13.87□□□□□ -0.19
CCDC140Q96MF4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 AC009949.1-201ENST00000623048 1830 ntBASIC13.87□□□□□ -0.19
CCDC140Q96MF4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC140Q96MF4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC140Q96MF4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms