Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 MMP23A-201ENST00000234610 1017 ntBASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATG4AQ8WYN0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 PRORSD1P-202ENST00000563365 2154 ntBASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
ATG4AQ8WYN0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AC022211.2-201ENST00000585075 2527 ntBASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 HMGA1P5-201ENST00000412453 271 ntBASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AC092865.7-201ENST00000641832 219 ntBASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
ATG4AQ8WYN0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ATG4AQ8WYN0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms