Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 POLD2P1-201ENST00000511220 997 ntBASIC17.43■□□□□ 0.38
LMX1AQ8TE12 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 AC022898.2-201ENST00000616822 1312 ntBASIC17.43■□□□□ 0.38
LMX1AQ8TE12 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 HLA-J-201ENST00000462773 1622 ntBASIC17.43■□□□□ 0.38
LMX1AQ8TE12 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LMX1AQ8TE12 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AC073592.3-201ENST00000625118 1834 ntBASIC17.42■□□□□ 0.38
LMX1AQ8TE12 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AC092910.1-201ENST00000482027 1129 ntBASIC17.42■□□□□ 0.38
LMX1AQ8TE12 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LMX1AQ8TE12 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 MTDHP4-201ENST00000600287 670 ntBASIC17.41■□□□□ 0.38
LMX1AQ8TE12 TERC-201ENST00000602385 541 ntBASIC17.41■□□□□ 0.38
LMX1AQ8TE12 AC025062.2-201ENST00000605477 670 ntBASIC17.41■□□□□ 0.38
LMX1AQ8TE12 AP000867.4-201ENST00000641616 219 ntBASIC17.41■□□□□ 0.38
LMX1AQ8TE12 HTR7P1-202ENST00000624664 4411 ntBASIC17.41■□□□□ 0.38
LMX1AQ8TE12 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LMX1AQ8TE12 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms