Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 GPR32P1-201ENST00000601788 811 ntBASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
SH3RF1Q7Z6J0 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 AC243591.1-201ENST00000452967 1364 ntBASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 AC009065.1-201ENST00000564055 1225 ntBASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 AC106730.1-201ENST00000566722 1090 ntBASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.52■□□□□ 0.88
SH3RF1Q7Z6J0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SH3RF1Q7Z6J0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SH3RF1Q7Z6J0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SH3RF1Q7Z6J0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.52■□□□□ 0.87
SH3RF1Q7Z6J0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 IGHGP-201ENST00000390555 1178 ntBASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 MIR940-201ENST00000401276 94 ntBASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 MIR3180-4-201ENST00000582223 153 ntBASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.51■□□□□ 0.87
SH3RF1Q7Z6J0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 AC093010.1-201ENST00000473625 1624 ntBASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms