Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
KRT40Q6A162 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
KRT40Q6A162 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
KRT40Q6A162 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
KRT40Q6A162 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.79■□□□□ 0.92
KRT40Q6A162 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 MIR662-201ENST00000384847 95 ntBASIC20.79■□□□□ 0.92
KRT40Q6A162 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.79■□□□□ 0.92
KRT40Q6A162 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.79■□□□□ 0.92
KRT40Q6A162 AL136038.3-201ENST00000561909 1096 ntBASIC20.79■□□□□ 0.92
KRT40Q6A162 RN7SL510P-201ENST00000581311 263 ntBASIC20.79■□□□□ 0.92
KRT40Q6A162 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
KRT40Q6A162 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.79■□□□□ 0.92
KRT40Q6A162 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
KRT40Q6A162 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KRT40Q6A162 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.78■□□□□ 0.92
KRT40Q6A162 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
KRT40Q6A162 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
KRT40Q6A162 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.78■□□□□ 0.92
KRT40Q6A162 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 SPDYE13P-201ENST00000445314 798 ntBASIC20.78■□□□□ 0.92
KRT40Q6A162 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.78■□□□□ 0.92
KRT40Q6A162 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.78■□□□□ 0.92
KRT40Q6A162 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.78■□□□□ 0.92
KRT40Q6A162 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
KRT40Q6A162 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.78■□□□□ 0.92
KRT40Q6A162 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT40Q6A162 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC20.78■□□□□ 0.92
KRT40Q6A162 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.78■□□□□ 0.92
KRT40Q6A162 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
KRT40Q6A162 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
KRT40Q6A162 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KRT40Q6A162 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT40Q6A162 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT40Q6A162 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
KRT40Q6A162 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.77■□□□□ 0.92
KRT40Q6A162 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.77■□□□□ 0.92
KRT40Q6A162 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT40Q6A162 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.77■□□□□ 0.92
KRT40Q6A162 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KRT40Q6A162 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
KRT40Q6A162 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.77■□□□□ 0.91
KRT40Q6A162 LINC01311-201ENST00000565162 1445 ntBASIC20.77■□□□□ 0.91
KRT40Q6A162 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.77■□□□□ 0.91
KRT40Q6A162 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.77■□□□□ 0.91
KRT40Q6A162 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
KRT40Q6A162 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
KRT40Q6A162 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.77■□□□□ 0.91
KRT40Q6A162 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.77■□□□□ 0.91
KRT40Q6A162 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
KRT40Q6A162 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT40Q6A162 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.76■□□□□ 0.91
KRT40Q6A162 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.76■□□□□ 0.91
KRT40Q6A162 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT40Q6A162 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.76■□□□□ 0.91
KRT40Q6A162 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
KRT40Q6A162 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms