Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS53Q5VIR6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.65■■□□□ 1.06
VPS53Q5VIR6 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS53Q5VIR6 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.06
VPS53Q5VIR6 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 PKD1P1-201ENST00000458669 6805 ntBASIC21.64■■□□□ 1.05
VPS53Q5VIR6 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VPS53Q5VIR6 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 KRT8P26-201ENST00000534154 1276 ntBASIC21.63■■□□□ 1.05
VPS53Q5VIR6 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 AC091076.1-201ENST00000610741 619 ntBASIC21.63■■□□□ 1.05
VPS53Q5VIR6 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VPS53Q5VIR6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms