Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RNF4P78317 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
RNF4P78317 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RNF4P78317 AC135050.7-201ENST00000624508 2218 ntBASIC16.6■□□□□ 0.25
RNF4P78317 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.59■□□□□ 0.25
RNF4P78317 DUSP5P1-201ENST00000441325 1139 ntBASIC16.59■□□□□ 0.25
RNF4P78317 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.59■□□□□ 0.25
RNF4P78317 AC099336.1-202ENST00000602961 463 ntBASIC16.59■□□□□ 0.25
RNF4P78317 AP000997.3-201ENST00000623333 2250 ntBASIC16.59■□□□□ 0.25
RNF4P78317 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RNF4P78317 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RNF4P78317 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RNF4P78317 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.58■□□□□ 0.25
RNF4P78317 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
RNF4P78317 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.58■□□□□ 0.25
RNF4P78317 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RNF4P78317 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
RNF4P78317 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
RNF4P78317 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.58■□□□□ 0.24
RNF4P78317 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.58■□□□□ 0.24
RNF4P78317 FOSL1P1-201ENST00000511041 816 ntBASIC16.58■□□□□ 0.24
RNF4P78317 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.58■□□□□ 0.24
RNF4P78317 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
RNF4P78317 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.58■□□□□ 0.24
RNF4P78317 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.58■□□□□ 0.24
RNF4P78317 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RNF4P78317 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RNF4P78317 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
RNF4P78317 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
RNF4P78317 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.57■□□□□ 0.24
RNF4P78317 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.57■□□□□ 0.24
RNF4P78317 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.57■□□□□ 0.24
RNF4P78317 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.57■□□□□ 0.24
RNF4P78317 FLJ13224-201ENST00000313737 1514 ntBASIC16.57■□□□□ 0.24
RNF4P78317 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RNF4P78317 AC125634.1-201ENST00000438758 1403 ntBASIC16.57■□□□□ 0.24
RNF4P78317 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms