Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
RPL39P62891 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
RPL39P62891 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC12.72□□□□□ -0.37
RPL39P62891 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC12.71□□□□□ -0.37
RPL39P62891 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
RPL39P62891 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
RPL39P62891 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 AL023284.2-201ENST00000405850 579 ntBASIC12.71□□□□□ -0.37
RPL39P62891 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC12.71□□□□□ -0.37
RPL39P62891 AC069152.1-201ENST00000438030 544 ntBASIC12.71□□□□□ -0.37
RPL39P62891 MAP2K4P1-201ENST00000438453 1195 ntBASIC12.71□□□□□ -0.37
RPL39P62891 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC12.71□□□□□ -0.37
RPL39P62891 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC12.71□□□□□ -0.37
RPL39P62891 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC12.71□□□□□ -0.37
RPL39P62891 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC12.71□□□□□ -0.37
RPL39P62891 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC12.71□□□□□ -0.37
RPL39P62891 AC233263.1-201ENST00000578059 224 ntBASIC12.71□□□□□ -0.37
RPL39P62891 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC12.71□□□□□ -0.37
RPL39P62891 ABBA01031674.1-201ENST00000635145 728 ntBASIC12.71□□□□□ -0.37
RPL39P62891 GAMT-205ENST00000640762 751 ntTSL 5 BASIC12.71□□□□□ -0.37
RPL39P62891 AC133041.1-202ENST00000642053 222 ntBASIC12.71□□□□□ -0.37
RPL39P62891 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 AL138688.1-201ENST00000624851 1594 ntBASIC12.71□□□□□ -0.37
RPL39P62891 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
RPL39P62891 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPL39P62891 AL163051.1-201ENST00000569214 1512 ntBASIC12.71□□□□□ -0.38
RPL39P62891 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
RPL39P62891 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC12.71□□□□□ -0.38
RPL39P62891 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
RPL39P62891 AL139384.1-201ENST00000612143 3047 ntBASIC12.71□□□□□ -0.38
RPL39P62891 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPL39P62891 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
RPL39P62891 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
RPL39P62891 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
RPL39P62891 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.38
RPL39P62891 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC12.7□□□□□ -0.38
RPL39P62891 GPAT2P1-201ENST00000444924 1672 ntBASIC12.7□□□□□ -0.38
RPL39P62891 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
RPL39P62891 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
RPL39P62891 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC12.7□□□□□ -0.38
RPL39P62891 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
RPL39P62891 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
RPL39P62891 MIR149-201ENST00000384879 89 ntBASIC12.7□□□□□ -0.38
RPL39P62891 KRT17P3-201ENST00000420566 1262 ntBASIC12.7□□□□□ -0.38
RPL39P62891 PPP1R14BP5-201ENST00000440334 435 ntBASIC12.7□□□□□ -0.38
RPL39P62891 AC008040.2-201ENST00000461049 708 ntBASIC12.7□□□□□ -0.38
RPL39P62891 RPS2P4-201ENST00000476944 856 ntBASIC12.7□□□□□ -0.38
RPL39P62891 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC12.7□□□□□ -0.38
RPL39P62891 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC12.7□□□□□ -0.38
RPL39P62891 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC12.7□□□□□ -0.38
RPL39P62891 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
RPL39P62891 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
RPL39P62891 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
RPL39P62891 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
RPL39P62891 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
RPL39P62891 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC12.7□□□□□ -0.38
RPL39P62891 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
RPL39P62891 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC12.69□□□□□ -0.38
RPL39P62891 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
RPL39P62891 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC12.69□□□□□ -0.38
RPL39P62891 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
RPL39P62891 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
RPL39P62891 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms