Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.12■□□□□ 0.97
RHBDL3P58872 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.12■□□□□ 0.97
RHBDL3P58872 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RHBDL3P58872 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.12■□□□□ 0.97
RHBDL3P58872 LBH-204ENST00000406087 559 ntTSL 4 BASIC21.12■□□□□ 0.97
RHBDL3P58872 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 KRT18P27-201ENST00000427733 1299 ntBASIC21.12■□□□□ 0.97
RHBDL3P58872 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.12■□□□□ 0.97
RHBDL3P58872 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.12■□□□□ 0.97
RHBDL3P58872 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.12■□□□□ 0.97
RHBDL3P58872 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.12■□□□□ 0.97
RHBDL3P58872 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RHBDL3P58872 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
RHBDL3P58872 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.12■□□□□ 0.97
RHBDL3P58872 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RHBDL3P58872 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RHBDL3P58872 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.11■□□□□ 0.97
RHBDL3P58872 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RHBDL3P58872 FABP5-202ENST00000396359 986 ntTSL 5 BASIC21.11■□□□□ 0.97
RHBDL3P58872 PGAM5P1-201ENST00000518923 814 ntBASIC21.11■□□□□ 0.97
RHBDL3P58872 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.11■□□□□ 0.97
RHBDL3P58872 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.11■□□□□ 0.97
RHBDL3P58872 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RHBDL3P58872 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RHBDL3P58872 REXO1L9P-201ENST00000604264 2108 ntBASIC21.11■□□□□ 0.97
RHBDL3P58872 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RHBDL3P58872 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.11■□□□□ 0.97
RHBDL3P58872 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
RHBDL3P58872 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
RHBDL3P58872 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RHBDL3P58872 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.11■□□□□ 0.97
RHBDL3P58872 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.1■□□□□ 0.97
RHBDL3P58872 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.1■□□□□ 0.97
RHBDL3P58872 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.1■□□□□ 0.97
RHBDL3P58872 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 AC073621.1-201ENST00000392730 636 ntBASIC21.1■□□□□ 0.97
RHBDL3P58872 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.1■□□□□ 0.97
RHBDL3P58872 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.1■□□□□ 0.97
RHBDL3P58872 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC21.1■□□□□ 0.97
RHBDL3P58872 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
RHBDL3P58872 AC009949.1-201ENST00000623048 1830 ntBASIC21.1■□□□□ 0.97
RHBDL3P58872 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RHBDL3P58872 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.1■□□□□ 0.97
RHBDL3P58872 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 AC148477.5-201ENST00000625164 1645 ntBASIC21.09■□□□□ 0.97
RHBDL3P58872 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.09■□□□□ 0.97
RHBDL3P58872 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.09■□□□□ 0.97
RHBDL3P58872 UNC93B6-202ENST00000528242 690 ntBASIC21.09■□□□□ 0.97
RHBDL3P58872 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RHBDL3P58872 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC21.09■□□□□ 0.97
RHBDL3P58872 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 SDCCAG3P1-201ENST00000589292 1150 ntBASIC21.09■□□□□ 0.97
RHBDL3P58872 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.09■□□□□ 0.97
RHBDL3P58872 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC21.09■□□□□ 0.97
RHBDL3P58872 Z83851.2-201ENST00000609564 659 ntBASIC21.09■□□□□ 0.97
RHBDL3P58872 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.09■□□□□ 0.97
RHBDL3P58872 AP000997.3-201ENST00000623333 2250 ntBASIC21.09■□□□□ 0.97
RHBDL3P58872 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RHBDL3P58872 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms