Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PKNOX1P55347 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.62■□□□□ 0.41
PKNOX1P55347 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 AC128688.1-201ENST00000487626 519 ntBASIC17.62■□□□□ 0.41
PKNOX1P55347 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.62■□□□□ 0.41
PKNOX1P55347 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 AL355075.4-201ENST00000554988 638 ntBASIC17.62■□□□□ 0.41
PKNOX1P55347 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.62■□□□□ 0.41
PKNOX1P55347 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
PKNOX1P55347 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PKNOX1P55347 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PKNOX1P55347 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.62■□□□□ 0.41
PKNOX1P55347 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 AC022211.2-201ENST00000585075 2527 ntBASIC17.61■□□□□ 0.41
PKNOX1P55347 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
PKNOX1P55347 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 SNORA78-201ENST00000459373 127 ntBASIC17.61■□□□□ 0.41
PKNOX1P55347 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.61■□□□□ 0.41
PKNOX1P55347 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 DUTP2-201ENST00000519164 463 ntBASIC17.61■□□□□ 0.41
PKNOX1P55347 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.61■□□□□ 0.41
PKNOX1P55347 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 AL512604.3-201ENST00000569583 964 ntBASIC17.61■□□□□ 0.41
PKNOX1P55347 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.61■□□□□ 0.41
PKNOX1P55347 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
PKNOX1P55347 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
PKNOX1P55347 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PKNOX1P55347 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.61■□□□□ 0.41
PKNOX1P55347 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
PKNOX1P55347 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 SEC1P-202ENST00000473944 940 ntBASIC17.6■□□□□ 0.41
PKNOX1P55347 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.6■□□□□ 0.41
PKNOX1P55347 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 AC008687.5-201ENST00000593746 558 ntBASIC17.6■□□□□ 0.41
PKNOX1P55347 TMEM191A-211ENST00000637163 1067 ntBASIC17.6■□□□□ 0.41
PKNOX1P55347 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.6■□□□□ 0.41
PKNOX1P55347 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.6■□□□□ 0.41
PKNOX1P55347 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PKNOX1P55347 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PKNOX1P55347 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PKNOX1P55347 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms