Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A3P12111 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A3P12111 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL6A3P12111 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 MYCLP1-201ENST00000372451 1075 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 AL355306.1-201ENST00000415580 579 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 SPDYE11-202ENST00000450699 704 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A3P12111 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.54■□□□□ 0.56
COL6A3P12111 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A3P12111 SPDYE9P-201ENST00000570642 692 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 SPDYE10P-202ENST00000612005 668 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 SPDYE8P-202ENST00000612377 668 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL6A3P12111 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 TP53TG3HP-202ENST00000569755 579 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL6A3P12111 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A3P12111 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 AC006116.8-202ENST00000587620 1550 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.53■□□□□ 0.56
COL6A3P12111 DGCR5-201ENST00000399539 862 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL6A3P12111 RAB43P1-201ENST00000561790 589 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 TMEM261P1-201ENST00000604899 340 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 COX11-210ENST00000639671 696 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 SDHAP2-201ENST00000455183 2001 ntBASIC18.53■□□□□ 0.56
COL6A3P12111 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.53■□□□□ 0.56
COL6A3P12111 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL6A3P12111 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL6A3P12111 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A3P12111 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A3P12111 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A3P12111 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.52■□□□□ 0.56
COL6A3P12111 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.52■□□□□ 0.56
COL6A3P12111 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.52■□□□□ 0.56
COL6A3P12111 SPDYE7P-202ENST00000420373 878 ntBASIC18.52■□□□□ 0.56
COL6A3P12111 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.52■□□□□ 0.56
COL6A3P12111 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
COL6A3P12111 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL6A3P12111 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A3P12111 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A3P12111 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A3P12111 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.52■□□□□ 0.55
COL6A3P12111 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL6A3P12111 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
COL6A3P12111 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.52■□□□□ 0.55
COL6A3P12111 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL6A3P12111 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A3P12111 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.51■□□□□ 0.55
COL6A3P12111 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL6A3P12111 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL6A3P12111 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
COL6A3P12111 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 KRT8P23-201ENST00000560090 1207 ntBASIC18.51■□□□□ 0.55
COL6A3P12111 AC243562.1-201ENST00000560672 389 ntBASIC18.51■□□□□ 0.55
COL6A3P12111 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
COL6A3P12111 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A3P12111 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.51■□□□□ 0.55
COL6A3P12111 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL6A3P12111 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL6A3P12111 AC132938.5-201ENST00000624980 1813 ntBASIC18.51■□□□□ 0.55
COL6A3P12111 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms