Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VIMP08670 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VIMP08670 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VIMP08670 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
VIMP08670 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.06■□□□□ 0.48
VIMP08670 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.06■□□□□ 0.48
VIMP08670 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.06■□□□□ 0.48
VIMP08670 HLA-B-256ENST00000639848 1089 ntBASIC18.06■□□□□ 0.48
VIMP08670 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VIMP08670 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.06■□□□□ 0.48
VIMP08670 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VIMP08670 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VIMP08670 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
VIMP08670 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VIMP08670 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VIMP08670 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VIMP08670 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
VIMP08670 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.05■□□□□ 0.48
VIMP08670 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.05■□□□□ 0.48
VIMP08670 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.05■□□□□ 0.48
VIMP08670 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
VIMP08670 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.05■□□□□ 0.48
VIMP08670 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.05■□□□□ 0.48
VIMP08670 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.05■□□□□ 0.48
VIMP08670 PNMA6B-201ENST00000538162 1200 ntBASIC18.05■□□□□ 0.48
VIMP08670 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.05■□□□□ 0.48
VIMP08670 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.05■□□□□ 0.48
VIMP08670 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.05■□□□□ 0.48
VIMP08670 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.05■□□□□ 0.48
VIMP08670 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.05■□□□□ 0.48
VIMP08670 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.05■□□□□ 0.48
VIMP08670 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.05■□□□□ 0.48
VIMP08670 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VIMP08670 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VIMP08670 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.04■□□□□ 0.48
VIMP08670 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.04■□□□□ 0.48
VIMP08670 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VIMP08670 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 MIPEPP3-201ENST00000412105 444 ntBASIC18.04■□□□□ 0.48
VIMP08670 AC004911.1-201ENST00000416316 871 ntBASIC18.04■□□□□ 0.48
VIMP08670 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.04■□□□□ 0.48
VIMP08670 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 AC091874.3-201ENST00000512672 1195 ntBASIC18.04■□□□□ 0.48
VIMP08670 AC022517.1-201ENST00000592429 346 ntBASIC18.04■□□□□ 0.48
VIMP08670 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
VIMP08670 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 AC093010.1-201ENST00000473625 1624 ntBASIC18.04■□□□□ 0.48
VIMP08670 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
VIMP08670 DOC2GP-204ENST00000639052 2548 ntBASIC18.04■□□□□ 0.48
VIMP08670 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
VIMP08670 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.04■□□□□ 0.48
VIMP08670 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 AGGF1P2-201ENST00000426656 2106 ntBASIC18.04■□□□□ 0.48
VIMP08670 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VIMP08670 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.04■□□□□ 0.48
VIMP08670 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VIMP08670 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
VIMP08670 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VIMP08670 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VIMP08670 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.03■□□□□ 0.48
VIMP08670 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VIMP08670 AL109659.2-201ENST00000606809 1674 ntBASIC18.03■□□□□ 0.48
VIMP08670 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VIMP08670 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VIMP08670 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.03■□□□□ 0.48
VIMP08670 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms