Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 AL592071.1-201ENST00000611956 408 ntBASIC18.2■□□□□ 0.5
HLA-DQB2P05538 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 AL358472.4-201ENST00000633140 710 ntBASIC18.2■□□□□ 0.5
HLA-DQB2P05538 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQB2P05538 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 GNAS-203ENST00000306120 1878 ntBASIC18.19■□□□□ 0.5
HLA-DQB2P05538 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 RN7SL606P-201ENST00000472779 293 ntBASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQB2P05538 AC009949.1-201ENST00000623048 1830 ntBASIC18.19■□□□□ 0.5
HLA-DQB2P05538 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AC016734.2-201ENST00000624325 1377 ntBASIC18.18■□□□□ 0.5
HLA-DQB2P05538 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 BX276092.5-203ENST00000456199 560 ntBASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 GUSBP12-201ENST00000513727 720 ntBASIC18.18■□□□□ 0.5
HLA-DQB2P05538 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AL121672.3-201ENST00000608644 468 ntBASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AC124864.1-201ENST00000623408 392 ntBASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 AP000550.4-202ENST00000639755 178 ntBASIC18.18■□□□□ 0.5
HLA-DQB2P05538 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQB2P05538 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DQB2P05538 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HLA-DQB2P05538 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DQB2P05538 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HLA-DQB2P05538 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms