Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA1P02708 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA1P02708 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.43■□□□□ 0.7
CHRNA1P02708 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA1P02708 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA1P02708 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA1P02708 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.43■□□□□ 0.7
CHRNA1P02708 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
CHRNA1P02708 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHRNA1P02708 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.42■□□□□ 0.7
CHRNA1P02708 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.42■□□□□ 0.7
CHRNA1P02708 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CHRNA1P02708 UPF3AP3-201ENST00000420996 769 ntBASIC19.42■□□□□ 0.7
CHRNA1P02708 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.42■□□□□ 0.7
CHRNA1P02708 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.42■□□□□ 0.7
CHRNA1P02708 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 AL096828.2-201ENST00000567259 1965 ntBASIC19.42■□□□□ 0.7
CHRNA1P02708 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHRNA1P02708 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.42■□□□□ 0.7
CHRNA1P02708 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.42■□□□□ 0.7
CHRNA1P02708 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
CHRNA1P02708 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 AL049757.1-201ENST00000616842 1596 ntBASIC19.41■□□□□ 0.7
CHRNA1P02708 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CHRNA1P02708 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 RPSAP43-201ENST00000402237 625 ntBASIC19.41■□□□□ 0.7
CHRNA1P02708 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.41■□□□□ 0.7
CHRNA1P02708 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 AC010327.4-202ENST00000591484 748 ntBASIC19.41■□□□□ 0.7
CHRNA1P02708 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.41■□□□□ 0.7
CHRNA1P02708 AL353593.2-201ENST00000602529 1483 ntBASIC19.41■□□□□ 0.7
CHRNA1P02708 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CHRNA1P02708 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHRNA1P02708 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.41■□□□□ 0.7
CHRNA1P02708 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.41■□□□□ 0.7
CHRNA1P02708 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.4■□□□□ 0.7
CHRNA1P02708 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CHRNA1P02708 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.4■□□□□ 0.7
CHRNA1P02708 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CHRNA1P02708 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.4■□□□□ 0.7
CHRNA1P02708 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.4■□□□□ 0.7
CHRNA1P02708 YBX2P1-201ENST00000394192 760 ntBASIC19.4■□□□□ 0.7
CHRNA1P02708 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.4■□□□□ 0.7
CHRNA1P02708 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CHRNA1P02708 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.4■□□□□ 0.7
CHRNA1P02708 AC040169.1-201ENST00000565382 521 ntBASIC19.4■□□□□ 0.7
CHRNA1P02708 AC006557.2-201ENST00000592985 1240 ntBASIC19.4■□□□□ 0.7
CHRNA1P02708 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.4■□□□□ 0.7
CHRNA1P02708 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.4■□□□□ 0.7
CHRNA1P02708 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.4■□□□□ 0.7
CHRNA1P02708 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CHRNA1P02708 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CHRNA1P02708 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CHRNA1P02708 AC132938.5-201ENST00000624980 1813 ntBASIC19.39■□□□□ 0.7
CHRNA1P02708 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHRNA1P02708 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CHRNA1P02708 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms