Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 AL590627.1-203ENST00000421194 1026 ntBASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 AC068472.1-201ENST00000474589 881 ntBASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 AC120114.3-201ENST00000611923 658 ntBASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX2IPQ9Y2D8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 KRT18P67-201ENST00000432816 1264 ntBASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SSX2IPQ9Y2D8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 AL161938.1-201ENST00000569833 2180 ntBASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 AC132008.2-207ENST00000454517 770 ntBASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 AC008608.2-201ENST00000606089 416 ntBASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 AC117500.6-201ENST00000624871 588 ntBASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX2IPQ9Y2D8 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 TP73-AS1-210ENST00000637775 1455 ntBASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 RBM17P3-201ENST00000417687 1192 ntBASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 AC023511.2-201ENST00000618803 211 ntBASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 TP73-AS1-207ENST00000624167 988 ntBASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms