Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 AC133963.1-201ENST00000504166 1679 ntBASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMCH1Q9UPQ0 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 AC087499.1-201ENST00000418141 1075 ntBASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMCH1Q9UPQ0 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 AC024563.2-201ENST00000603282 481 ntBASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMCH1Q9UPQ0 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 KRT89P-201ENST00000620027 1478 ntBASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 AL023973.1-201ENST00000624619 620 ntBASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIMCH1Q9UPQ0 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMCH1Q9UPQ0 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.14■□□□□ 0.98
LIMCH1Q9UPQ0 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.14■□□□□ 0.98
LIMCH1Q9UPQ0 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMCH1Q9UPQ0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.14■□□□□ 0.98
LIMCH1Q9UPQ0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LIMCH1Q9UPQ0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 SLC25A3P1-201ENST00000443844 931 ntBASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 RASA4DP-201ENST00000460726 1199 ntBASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 AC079602.3-201ENST00000623931 403 ntBASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMCH1Q9UPQ0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LIMCH1Q9UPQ0 AC140113.3-201ENST00000605663 199 ntBASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms