Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AC004870.1-201ENST00000315132 882 ntBASIC17.42■□□□□ 0.38
VPS4AQ9UN37 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AC246785.2-201ENST00000432512 513 ntBASIC17.42■□□□□ 0.38
VPS4AQ9UN37 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 AC099343.3-201ENST00000605834 2503 ntBASIC17.42■□□□□ 0.38
VPS4AQ9UN37 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS4AQ9UN37 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 GMCL1P1-201ENST00000463439 1581 ntBASIC17.41■□□□□ 0.38
VPS4AQ9UN37 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 REXO1L9P-201ENST00000604264 2108 ntBASIC17.41■□□□□ 0.38
VPS4AQ9UN37 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 LINC01311-201ENST00000565162 1445 ntBASIC17.41■□□□□ 0.38
VPS4AQ9UN37 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 RN7SL510P-201ENST00000581311 263 ntBASIC17.41■□□□□ 0.38
VPS4AQ9UN37 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS4AQ9UN37 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 AP000997.3-201ENST00000623333 2250 ntBASIC17.4■□□□□ 0.38
VPS4AQ9UN37 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 SLC25A6P5-201ENST00000435663 894 ntBASIC17.4■□□□□ 0.38
VPS4AQ9UN37 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 AP003041.3-201ENST00000527151 707 ntBASIC17.4■□□□□ 0.38
VPS4AQ9UN37 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 AC111152.3-201ENST00000569699 673 ntBASIC17.4■□□□□ 0.38
VPS4AQ9UN37 GPALPP1-207ENST00000611650 899 ntBASIC17.4■□□□□ 0.38
VPS4AQ9UN37 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VPS4AQ9UN37 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VPS4AQ9UN37 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS4AQ9UN37 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS4AQ9UN37 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VPS4AQ9UN37 KRT8P50-201ENST00000562022 1438 ntBASIC17.39■□□□□ 0.38
VPS4AQ9UN37 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VPS4AQ9UN37 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms