Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CNTN3Q9P232 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNTN3Q9P232 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CNTN3Q9P232 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.3■□□□□ 0.68
CNTN3Q9P232 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNTN3Q9P232 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CNTN3Q9P232 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CNTN3Q9P232 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC132008.2-207ENST00000454517 770 ntBASIC19.29■□□□□ 0.68
CNTN3Q9P232 AF238378.1-201ENST00000526806 358 ntBASIC19.29■□□□□ 0.68
CNTN3Q9P232 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AL121912.1-201ENST00000603683 238 ntBASIC19.29■□□□□ 0.68
CNTN3Q9P232 REXO1L9P-201ENST00000604264 2108 ntBASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC135050.7-201ENST00000624508 2218 ntBASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.29■□□□□ 0.68
CNTN3Q9P232 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CNTN3Q9P232 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CNTN3Q9P232 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CNTN3Q9P232 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.28■□□□□ 0.68
CNTN3Q9P232 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 AL160237.2-201ENST00000556165 472 ntBASIC19.27■□□□□ 0.68
CNTN3Q9P232 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CNTN3Q9P232 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.27■□□□□ 0.68
CNTN3Q9P232 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms