Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCX3AQ9NNX9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VCX3AQ9NNX9 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AC007950.2-201ENST00000615045 2347 ntBASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 KRT19P1-201ENST00000405746 1186 ntBASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AC027612.3-201ENST00000413684 1047 ntBASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 RCC2P6-201ENST00000526625 1557 ntBASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 AC006116.8-202ENST00000587620 1550 ntBASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCX3AQ9NNX9 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 AP006587.1-201ENST00000534129 1502 ntBASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.8■□□□□ 0.28
VCX3AQ9NNX9 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 MIR600HG-201ENST00000449175 5984 ntBASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 AC105917.1-201ENST00000506637 2539 ntBASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.79■□□□□ 0.28
VCX3AQ9NNX9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.78■□□□□ 0.28
VCX3AQ9NNX9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms