Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TRIM39Q9HCM9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 AC246785.2-201ENST00000432512 513 ntBASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 LINC00265-3P-201ENST00000447588 903 ntBASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 TOB2P1-201ENST00000469761 992 ntBASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 VENTXP7-201ENST00000475503 772 ntBASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM39Q9HCM9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 AC233702.3-201ENST00000578656 1387 ntBASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 Z69720.1-201ENST00000601483 472 ntBASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM39Q9HCM9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 AL845331.1-201ENST00000424978 1190 ntBASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 AP000867.3-201ENST00000524675 377 ntBASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 MIR3652-201ENST00000579335 131 ntBASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms