Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.57■□□□□ 0.56
PCDH9Q9HC56 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 DUX4L26-201ENST00000489078 1255 ntBASIC18.57■□□□□ 0.56
PCDH9Q9HC56 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PCDH9Q9HC56 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 PP12613-201ENST00000424958 2230 ntBASIC18.56■□□□□ 0.56
PCDH9Q9HC56 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 HOMER2P1-201ENST00000455653 964 ntBASIC18.56■□□□□ 0.56
PCDH9Q9HC56 RASA4DP-201ENST00000460726 1199 ntBASIC18.56■□□□□ 0.56
PCDH9Q9HC56 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 FZD10-202ENST00000539839 3282 ntBASIC18.56■□□□□ 0.56
PCDH9Q9HC56 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.56■□□□□ 0.56
PCDH9Q9HC56 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 STARP1-201ENST00000397973 869 ntBASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AC092647.4-201ENST00000457211 535 ntBASIC18.55■□□□□ 0.56
PCDH9Q9HC56 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AC063952.2-201ENST00000498792 1227 ntBASIC18.55■□□□□ 0.56
PCDH9Q9HC56 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.55■□□□□ 0.56
PCDH9Q9HC56 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PCDH9Q9HC56 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms