Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 BICD1-207ENST00000551848 1962 ntBASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 LINC00602-201ENST00000629776 2065 ntBASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 AC096582.2-201ENST00000510860 516 ntBASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 AC125634.1-201ENST00000438758 1403 ntBASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 TP73-AS1-210ENST00000637775 1455 ntBASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRAIPQ9BWF2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
TRAIPQ9BWF2 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 RCN1P2-201ENST00000398357 915 ntBASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 MRPL3P1-201ENST00000400109 1033 ntBASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 AC099343.3-201ENST00000605834 2503 ntBASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAIPQ9BWF2 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 AC011467.2-201ENST00000598425 242 ntBASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 AC064862.7-201ENST00000604520 867 ntBASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 HCG11-201ENST00000411553 5696 ntBASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
TRAIPQ9BWF2 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms