Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 AC010240.3-201ENST00000607688 395 ntBASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 AC010653.2-201ENST00000623505 997 ntBASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 AC100803.2-201ENST00000562459 1963 ntBASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM56Q9BRZ2 AC132938.6-201ENST00000623828 1655 ntBASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 AC139713.2-201ENST00000641328 2723 ntBASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 AC006116.8-202ENST00000587620 1550 ntBASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRIM56Q9BRZ2 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM56Q9BRZ2 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM56Q9BRZ2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms