Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.59■□□□□ 0.09
COL12A1Q99715 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 AL589182.2-201ENST00000619332 1049 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 AL358472.5-202ENST00000641448 1267 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.59■□□□□ 0.09
COL12A1Q99715 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.59■□□□□ 0.09
COL12A1Q99715 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.59■□□□□ 0.09
COL12A1Q99715 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.59■□□□□ 0.09
COL12A1Q99715 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
COL12A1Q99715 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 AL049812.1-201ENST00000432563 2267 ntBASIC15.59■□□□□ 0.09
COL12A1Q99715 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL12A1Q99715 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
COL12A1Q99715 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.58■□□□□ 0.09
COL12A1Q99715 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
COL12A1Q99715 UBQLN4P1-201ENST00000461599 1801 ntBASIC15.58■□□□□ 0.09
COL12A1Q99715 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
COL12A1Q99715 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
COL12A1Q99715 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL12A1Q99715 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.58■□□□□ 0.09
COL12A1Q99715 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL12A1Q99715 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.58■□□□□ 0.09
COL12A1Q99715 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.58■□□□□ 0.09
COL12A1Q99715 ME2-218ENST00000640965 2476 ntTSL 5 BASIC15.58■□□□□ 0.08
COL12A1Q99715 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
COL12A1Q99715 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.58■□□□□ 0.08
COL12A1Q99715 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.58■□□□□ 0.08
COL12A1Q99715 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
COL12A1Q99715 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 CRYGEP-201ENST00000412192 528 ntBASIC15.58■□□□□ 0.08
COL12A1Q99715 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL12A1Q99715 AC008677.1-201ENST00000519230 1561 ntBASIC15.58■□□□□ 0.08
COL12A1Q99715 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
COL12A1Q99715 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.58■□□□□ 0.08
COL12A1Q99715 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC15.58■□□□□ 0.08
COL12A1Q99715 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.58■□□□□ 0.08
COL12A1Q99715 FEM1AP3-201ENST00000403722 1741 ntBASIC15.57■□□□□ 0.08
COL12A1Q99715 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.57■□□□□ 0.08
COL12A1Q99715 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 IGHV3-65-201ENST00000523210 341 ntBASIC15.57■□□□□ 0.08
COL12A1Q99715 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 FAM58CP-201ENST00000435741 640 ntBASIC15.57■□□□□ 0.08
COL12A1Q99715 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
COL12A1Q99715 AL022326.1-202ENST00000641533 845 ntBASIC15.57■□□□□ 0.08
COL12A1Q99715 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
COL12A1Q99715 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL12A1Q99715 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.57■□□□□ 0.08
COL12A1Q99715 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.57■□□□□ 0.08
COL12A1Q99715 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.57■□□□□ 0.08
COL12A1Q99715 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.56■□□□□ 0.08
COL12A1Q99715 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL12A1Q99715 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.56■□□□□ 0.08
COL12A1Q99715 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL12A1Q99715 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL12A1Q99715 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL12A1Q99715 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL12A1Q99715 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL12A1Q99715 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.56■□□□□ 0.08
COL12A1Q99715 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.56■□□□□ 0.08
COL12A1Q99715 MTCL1P1-201ENST00000446207 792 ntBASIC15.56■□□□□ 0.08
COL12A1Q99715 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms