Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 AP000997.3-201ENST00000623333 2250 ntBASIC20.84■□□□□ 0.93
TRERF1Q96PN7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 AC068472.1-201ENST00000474589 881 ntBASIC20.84■□□□□ 0.93
TRERF1Q96PN7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRERF1Q96PN7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 POM121L3P-201ENST00000419331 1163 ntBASIC20.83■□□□□ 0.93
TRERF1Q96PN7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 BNIP3P18-201ENST00000593976 575 ntBASIC20.83■□□□□ 0.93
TRERF1Q96PN7 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRERF1Q96PN7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.83■□□□□ 0.92
TRERF1Q96PN7 AC008894.3-201ENST00000624324 3103 ntBASIC20.82■□□□□ 0.92
TRERF1Q96PN7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 AKR1C7P-201ENST00000305623 895 ntBASIC20.82■□□□□ 0.92
TRERF1Q96PN7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.82■□□□□ 0.92
TRERF1Q96PN7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRERF1Q96PN7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 LINC00602-201ENST00000629776 2065 ntBASIC20.81■□□□□ 0.92
TRERF1Q96PN7 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 AL121912.1-201ENST00000603683 238 ntBASIC20.81■□□□□ 0.92
TRERF1Q96PN7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms