Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 AC084018.2-201ENST00000613093 2607 ntBASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCHCR1Q8TD31 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 WWOX-216ENST00000569818 525 ntBASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 CR769767.2-201ENST00000622735 460 ntBASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 PCDHA12-202ENST00000613593 2588 ntBASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCHCR1Q8TD31 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 AC005521.1-201ENST00000393351 872 ntBASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCHCR1Q8TD31 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CCHCR1Q8TD31 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCHCR1Q8TD31 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCHCR1Q8TD31 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCHCR1Q8TD31 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms