Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PPP4R4Q6NUP7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PPP4R4Q6NUP7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 FAM207BP-201ENST00000447172 505 ntBASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 AC011506.1-201ENST00000474329 610 ntBASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 AC007326.2-201ENST00000624224 7579 ntBASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 AP001094.4-201ENST00000579008 2176 ntBASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PPP4R4Q6NUP7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AC097488.1-201ENST00000507834 756 ntBASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AC133561.5-201ENST00000635547 218 ntBASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 AL023806.1-201ENST00000603994 1649 ntBASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PPP4R4Q6NUP7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 AL118508.1-201ENST00000613502 2345 ntBASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms