Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
USP41Q3LFD5 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP41Q3LFD5 AC126763.1-201ENST00000552015 2118 ntBASIC19.07■□□□□ 0.64
USP41Q3LFD5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 AC106730.1-201ENST00000566722 1090 ntBASIC19.07■□□□□ 0.64
USP41Q3LFD5 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 AC006538.3-201ENST00000612495 578 ntBASIC19.07■□□□□ 0.64
USP41Q3LFD5 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.07■□□□□ 0.64
USP41Q3LFD5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP41Q3LFD5 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 AC093503.3-201ENST00000624917 2352 ntBASIC19.06■□□□□ 0.64
USP41Q3LFD5 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 KRT18P58-201ENST00000527480 1120 ntBASIC19.06■□□□□ 0.64
USP41Q3LFD5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 AC116407.3-201ENST00000623905 1129 ntBASIC19.06■□□□□ 0.64
USP41Q3LFD5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP41Q3LFD5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USP41Q3LFD5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 AC007967.3-201ENST00000434308 558 ntBASIC19.05■□□□□ 0.64
USP41Q3LFD5 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 RPL13AP23-201ENST00000480739 586 ntBASIC19.05■□□□□ 0.64
USP41Q3LFD5 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 AL139288.1-201ENST00000623748 933 ntBASIC19.05■□□□□ 0.64
USP41Q3LFD5 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
USP41Q3LFD5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP41Q3LFD5 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms