Protein–RNA interactions for Protein: Q12766

HMGXB3, HMG domain-containing protein 3, humanhuman

Predictions only

Length 1,538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3Q12766 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 AC236430.1-201ENST00000402231 743 ntBASIC31.34■■■□□ 2.61
HMGXB3Q12766 GAPDHP21-201ENST00000450301 1010 ntBASIC31.34■■■□□ 2.61
HMGXB3Q12766 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 USP39-202ENST00000409025 1946 ntTSL 5 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 CXCL1P1-201ENST00000502804 216 ntBASIC31.34■■■□□ 2.61
HMGXB3Q12766 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC31.34■■■□□ 2.61
HMGXB3Q12766 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGXB3Q12766 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGXB3Q12766 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HMGXB3Q12766 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HMGXB3Q12766 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC31.33■■■□□ 2.61
HMGXB3Q12766 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HMGXB3Q12766 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGXB3Q12766 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC31.33■■■□□ 2.61
HMGXB3Q12766 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
HMGXB3Q12766 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
HMGXB3Q12766 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 CNN2P2-201ENST00000443536 909 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 CNN2P3-201ENST00000450201 906 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 MEIS3P1-201ENST00000495167 958 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 RNA5SP421-201ENST00000516864 134 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 STK25P1-201ENST00000585406 838 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 AL136317.3-201ENST00000618497 906 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
HMGXB3Q12766 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HMGXB3Q12766 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
HMGXB3Q12766 AC018445.3-201ENST00000624177 1945 ntBASIC31.32■■■□□ 2.6
HMGXB3Q12766 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 AC063926.2-201ENST00000623766 1308 ntBASIC31.31■■■□□ 2.6
HMGXB3Q12766 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
HMGXB3Q12766 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC31.31■■■□□ 2.6
HMGXB3Q12766 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 FAM207CP-201ENST00000443486 507 ntBASIC31.3■■■□□ 2.6
HMGXB3Q12766 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGXB3Q12766 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC31.3■■■□□ 2.6
HMGXB3Q12766 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC31.29■■■□□ 2.6
HMGXB3Q12766 DUX4L27-201ENST00000554796 1261 ntBASIC31.29■■■□□ 2.6
HMGXB3Q12766 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC31.29■■■□□ 2.6
HMGXB3Q12766 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGXB3Q12766 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGXB3Q12766 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGXB3Q12766 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC31.29■■■□□ 2.6
HMGXB3Q12766 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
HMGXB3Q12766 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGXB3Q12766 AC112191.1-201ENST00000523689 701 ntBASIC31.29■■■□□ 2.6
HMGXB3Q12766 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC31.29■■■□□ 2.6
HMGXB3Q12766 CYB561-216ENST00000582297 897 ntTSL 3 BASIC31.29■■■□□ 2.6
HMGXB3Q12766 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC31.29■■■□□ 2.6
HMGXB3Q12766 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
HMGXB3Q12766 GMCL1P1-201ENST00000463439 1581 ntBASIC31.28■■■□□ 2.6
HMGXB3Q12766 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
HMGXB3Q12766 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
HMGXB3Q12766 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC31.28■■■□□ 2.6
HMGXB3Q12766 TERF1P3-201ENST00000505638 1227 ntBASIC31.28■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms