Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC11.04□□□□□ -0.64
HSPG2P98160 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC11.04□□□□□ -0.64
HSPG2P98160 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC11.04□□□□□ -0.64
HSPG2P98160 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC11.04□□□□□ -0.64
HSPG2P98160 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC11.04□□□□□ -0.64
HSPG2P98160 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC11.04□□□□□ -0.64
HSPG2P98160 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC11.04□□□□□ -0.64
HSPG2P98160 KRT8P48-201ENST00000515599 1220 ntBASIC11.04□□□□□ -0.64
HSPG2P98160 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HSPG2P98160 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 RPS2P32-201ENST00000439199 892 ntBASIC11.03□□□□□ -0.64
HSPG2P98160 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC11.03□□□□□ -0.64
HSPG2P98160 SPDYE14P-201ENST00000442619 822 ntBASIC11.03□□□□□ -0.64
HSPG2P98160 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC11.03□□□□□ -0.64
HSPG2P98160 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 KLF2P3-201ENST00000451977 1087 ntBASIC11.03□□□□□ -0.64
HSPG2P98160 AC125807.1-201ENST00000483097 614 ntBASIC11.03□□□□□ -0.64
HSPG2P98160 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC11.03□□□□□ -0.64
HSPG2P98160 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC11.03□□□□□ -0.64
HSPG2P98160 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC11.03□□□□□ -0.64
HSPG2P98160 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC11.03□□□□□ -0.64
HSPG2P98160 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 IGHV3-71-201ENST00000523324 359 ntBASIC11.03□□□□□ -0.64
HSPG2P98160 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
HSPG2P98160 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 TDG-209ENST00000544861 1387 ntTSL 2 BASIC11.03□□□□□ -0.64
HSPG2P98160 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HSPG2P98160 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HSPG2P98160 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC11.02□□□□□ -0.64
HSPG2P98160 AC004945.1-201ENST00000416738 983 ntBASIC11.02□□□□□ -0.64
HSPG2P98160 RN7SL692P-201ENST00000464677 288 ntBASIC11.02□□□□□ -0.64
HSPG2P98160 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC11.02□□□□□ -0.64
HSPG2P98160 PARP8-206ENST00000503665 572 ntTSL 4 BASIC11.02□□□□□ -0.64
HSPG2P98160 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC11.02□□□□□ -0.64
HSPG2P98160 COQ6-210ENST00000554920 649 ntTSL 3 BASIC11.02□□□□□ -0.64
HSPG2P98160 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC11.02□□□□□ -0.64
HSPG2P98160 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC11.02□□□□□ -0.64
HSPG2P98160 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC11.02□□□□□ -0.64
HSPG2P98160 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC11.02□□□□□ -0.64
HSPG2P98160 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC11.02□□□□□ -0.64
HSPG2P98160 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
HSPG2P98160 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC11.02□□□□□ -0.64
HSPG2P98160 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
HSPG2P98160 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HSPG2P98160 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC11.02□□□□□ -0.64
HSPG2P98160 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HSPG2P98160 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HSPG2P98160 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HSPG2P98160 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HSPG2P98160 AC079776.1-201ENST00000401540 1152 ntBASIC11.02□□□□□ -0.65
HSPG2P98160 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC11.02□□□□□ -0.65
HSPG2P98160 SLC25A39P2-201ENST00000537614 270 ntBASIC11.02□□□□□ -0.65
HSPG2P98160 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC11.02□□□□□ -0.65
HSPG2P98160 AL662799.1-202ENST00000614205 422 ntBASIC11.02□□□□□ -0.65
HSPG2P98160 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HSPG2P98160 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 GNAS-203ENST00000306120 1878 ntBASIC11.02□□□□□ -0.65
HSPG2P98160 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC11.02□□□□□ -0.65
HSPG2P98160 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HSPG2P98160 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HSPG2P98160 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HSPG2P98160 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HSPG2P98160 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HSPG2P98160 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
HSPG2P98160 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC11.02□□□□□ -0.65
HSPG2P98160 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HSPG2P98160 SLC25A6P5-201ENST00000435663 894 ntBASIC11.02□□□□□ -0.65
HSPG2P98160 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms