Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC12.88□□□□□ -0.35
PRKDCP78527 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
PRKDCP78527 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
PRKDCP78527 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
PRKDCP78527 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.87□□□□□ -0.35
PRKDCP78527 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC12.87□□□□□ -0.35
PRKDCP78527 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 AC068587.9-201ENST00000641814 219 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 SIRPAP1-201ENST00000448467 1770 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 AL049757.1-201ENST00000616842 1596 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 TCF3P1-201ENST00000423021 1937 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 AC097493.3-201ENST00000509725 367 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.87□□□□□ -0.35
PRKDCP78527 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 SPDYE14P-201ENST00000442619 822 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.87□□□□□ -0.35
PRKDCP78527 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 AC009102.3-201ENST00000623118 1491 ntBASIC12.87□□□□□ -0.35
PRKDCP78527 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.87□□□□□ -0.35
PRKDCP78527 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
PRKDCP78527 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC12.87□□□□□ -0.35
PRKDCP78527 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.86□□□□□ -0.35
PRKDCP78527 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC12.86□□□□□ -0.35
PRKDCP78527 AC019129.2-201ENST00000609837 1235 ntBASIC12.86□□□□□ -0.35
PRKDCP78527 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 UBQLN4P1-201ENST00000461599 1801 ntBASIC12.86□□□□□ -0.35
PRKDCP78527 AC119751.2-201ENST00000504529 210 ntBASIC12.86□□□□□ -0.35
PRKDCP78527 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
PRKDCP78527 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.86□□□□□ -0.35
PRKDCP78527 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC12.86□□□□□ -0.35
PRKDCP78527 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 AL020989.1-201ENST00000422979 469 ntBASIC12.86□□□□□ -0.35
PRKDCP78527 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 AL499627.1-201ENST00000569373 2188 ntBASIC12.86□□□□□ -0.35
PRKDCP78527 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.86□□□□□ -0.35
PRKDCP78527 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
PRKDCP78527 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC12.86□□□□□ -0.35
PRKDCP78527 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.86□□□□□ -0.35
PRKDCP78527 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
PRKDCP78527 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.85□□□□□ -0.35
PRKDCP78527 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.85□□□□□ -0.35
PRKDCP78527 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms