Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 PMS2P7-201ENST00000506558 1336 ntBASIC19.24■□□□□ 0.67
VCPP55072 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.23■□□□□ 0.67
VCPP55072 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 MIR940-201ENST00000401276 94 ntBASIC19.23■□□□□ 0.67
VCPP55072 AC005104.2-201ENST00000427818 678 ntBASIC19.23■□□□□ 0.67
VCPP55072 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 SAPCD2P3-201ENST00000455031 850 ntBASIC19.23■□□□□ 0.67
VCPP55072 AF238378.1-201ENST00000526806 358 ntBASIC19.23■□□□□ 0.67
VCPP55072 AC064862.7-201ENST00000604520 867 ntBASIC19.23■□□□□ 0.67
VCPP55072 AL691403.2-201ENST00000618460 490 ntBASIC19.23■□□□□ 0.67
VCPP55072 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.23■□□□□ 0.67
VCPP55072 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.23■□□□□ 0.67
VCPP55072 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
VCPP55072 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.23■□□□□ 0.67
VCPP55072 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VCPP55072 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 AC005332.8-201ENST00000622750 2735 ntBASIC19.22■□□□□ 0.67
VCPP55072 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 MIR564-202ENST00000385049 94 ntBASIC19.22■□□□□ 0.67
VCPP55072 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.22■□□□□ 0.67
VCPP55072 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.22■□□□□ 0.67
VCPP55072 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 AC106730.1-201ENST00000566722 1090 ntBASIC19.22■□□□□ 0.67
VCPP55072 TERC-201ENST00000602385 541 ntBASIC19.22■□□□□ 0.67
VCPP55072 AL136038.4-201ENST00000603606 1261 ntBASIC19.22■□□□□ 0.67
VCPP55072 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 AL773604.1-201ENST00000617417 272 ntBASIC19.22■□□□□ 0.67
VCPP55072 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.22■□□□□ 0.67
VCPP55072 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
VCPP55072 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VCPP55072 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VCPP55072 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.22■□□□□ 0.67
VCPP55072 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.21■□□□□ 0.67
VCPP55072 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VCPP55072 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.21■□□□□ 0.67
VCPP55072 AC068880.1-201ENST00000507289 2297 ntBASIC19.21■□□□□ 0.67
VCPP55072 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VCPP55072 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VCPP55072 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.21■□□□□ 0.67
VCPP55072 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.21■□□□□ 0.67
VCPP55072 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.21■□□□□ 0.67
VCPP55072 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.21■□□□□ 0.67
VCPP55072 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VCPP55072 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.21■□□□□ 0.67
VCPP55072 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms