Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
EPHB3P54753 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
EPHB3P54753 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
EPHB3P54753 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
EPHB3P54753 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
EPHB3P54753 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
EPHB3P54753 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
EPHB3P54753 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.71■□□□□ 0.59
EPHB3P54753 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.71■□□□□ 0.59
EPHB3P54753 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
EPHB3P54753 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.71■□□□□ 0.59
EPHB3P54753 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
EPHB3P54753 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.71■□□□□ 0.59
EPHB3P54753 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.71■□□□□ 0.59
EPHB3P54753 SLC25A1P1-201ENST00000528351 927 ntBASIC18.71■□□□□ 0.59
EPHB3P54753 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.71■□□□□ 0.59
EPHB3P54753 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.71■□□□□ 0.59
EPHB3P54753 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.71■□□□□ 0.59
EPHB3P54753 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
EPHB3P54753 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.71■□□□□ 0.59
EPHB3P54753 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
EPHB3P54753 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
EPHB3P54753 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
EPHB3P54753 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.71■□□□□ 0.58
EPHB3P54753 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
EPHB3P54753 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.7■□□□□ 0.58
EPHB3P54753 MIR574-201ENST00000385209 96 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 RPS2P1-201ENST00000434010 821 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 AC122714.2-201ENST00000502787 707 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.7■□□□□ 0.58
EPHB3P54753 OR7E14P-202ENST00000530490 1290 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.7■□□□□ 0.58
EPHB3P54753 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.7■□□□□ 0.58
EPHB3P54753 AC023511.2-201ENST00000618803 211 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 AC116407.3-201ENST00000623905 1129 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 AP000867.4-201ENST00000641616 219 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 AP000974.1-201ENST00000623909 2387 ntBASIC18.7■□□□□ 0.58
EPHB3P54753 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
EPHB3P54753 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
EPHB3P54753 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
EPHB3P54753 KRT8P47-201ENST00000604727 1398 ntBASIC18.69■□□□□ 0.58
EPHB3P54753 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.69■□□□□ 0.58
EPHB3P54753 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
EPHB3P54753 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.69■□□□□ 0.58
EPHB3P54753 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
EPHB3P54753 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.69■□□□□ 0.58
EPHB3P54753 RPL13AP23-201ENST00000480739 586 ntBASIC18.69■□□□□ 0.58
EPHB3P54753 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.69■□□□□ 0.58
EPHB3P54753 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.69■□□□□ 0.58
EPHB3P54753 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.69■□□□□ 0.58
EPHB3P54753 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.69■□□□□ 0.58
EPHB3P54753 NKAPP1-205ENST00000585790 367 ntBASIC18.69■□□□□ 0.58
EPHB3P54753 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
EPHB3P54753 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.69■□□□□ 0.58
EPHB3P54753 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
EPHB3P54753 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
EPHB3P54753 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms