Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR1224-201ENST00000408193 85 ntBASIC18.67■□□□□ 0.58
PTPN9P43378 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.67■□□□□ 0.58
PTPN9P43378 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN9P43378 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PTPN9P43378 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 AL445228.2-201ENST00000605589 952 ntBASIC18.67■□□□□ 0.58
PTPN9P43378 AL121672.3-201ENST00000608644 468 ntBASIC18.67■□□□□ 0.58
PTPN9P43378 AL592071.1-201ENST00000611956 408 ntBASIC18.67■□□□□ 0.58
PTPN9P43378 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN9P43378 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 AC012317.2-201ENST00000623305 2251 ntBASIC18.67■□□□□ 0.58
PTPN9P43378 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN9P43378 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN9P43378 AC067852.2-201ENST00000590513 2313 ntBASIC18.67■□□□□ 0.58
PTPN9P43378 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN9P43378 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN9P43378 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN9P43378 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PTPN9P43378 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.66■□□□□ 0.58
PTPN9P43378 DDX43P3-201ENST00000441064 443 ntBASIC18.66■□□□□ 0.58
PTPN9P43378 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN9P43378 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN9P43378 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.66■□□□□ 0.58
PTPN9P43378 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PTPN9P43378 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PTPN9P43378 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
PTPN9P43378 IER3-202ENST00000376377 1350 ntBASIC18.66■□□□□ 0.58
PTPN9P43378 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PTPN9P43378 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN9P43378 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN9P43378 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
PTPN9P43378 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
PTPN9P43378 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.65■□□□□ 0.58
PTPN9P43378 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.65■□□□□ 0.58
PTPN9P43378 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.65■□□□□ 0.58
PTPN9P43378 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 CHCHD2P8-201ENST00000429873 447 ntBASIC18.65■□□□□ 0.58
PTPN9P43378 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.65■□□□□ 0.58
PTPN9P43378 BX276092.5-203ENST00000456199 560 ntBASIC18.65■□□□□ 0.58
PTPN9P43378 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.65■□□□□ 0.58
PTPN9P43378 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN9P43378 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.65■□□□□ 0.58
PTPN9P43378 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTPN9P43378 AP000550.4-202ENST00000639755 178 ntBASIC18.65■□□□□ 0.58
PTPN9P43378 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
PTPN9P43378 AC016734.2-201ENST00000624325 1377 ntBASIC18.65■□□□□ 0.58
PTPN9P43378 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTPN9P43378 AC009949.1-201ENST00000623048 1830 ntBASIC18.65■□□□□ 0.58
PTPN9P43378 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN9P43378 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.65■□□□□ 0.58
PTPN9P43378 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.65■□□□□ 0.58
PTPN9P43378 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
PTPN9P43378 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
PTPN9P43378 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.64■□□□□ 0.58
PTPN9P43378 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.64■□□□□ 0.57
PTPN9P43378 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PTPN9P43378 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN9P43378 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.64■□□□□ 0.57
PTPN9P43378 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PTPN9P43378 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms