Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.07■□□□□ 0.8
HTTP42858 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HTTP42858 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HTTP42858 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.07■□□□□ 0.8
HTTP42858 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.07■□□□□ 0.8
HTTP42858 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HTTP42858 AL805961.1-202ENST00000641562 540 ntBASIC20.07■□□□□ 0.8
HTTP42858 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.06■□□□□ 0.8
HTTP42858 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 FAM58CP-201ENST00000435741 640 ntBASIC20.06■□□□□ 0.8
HTTP42858 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.06■□□□□ 0.8
HTTP42858 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.06■□□□□ 0.8
HTTP42858 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.06■□□□□ 0.8
HTTP42858 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.06■□□□□ 0.8
HTTP42858 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.06■□□□□ 0.8
HTTP42858 AC009093.7-201ENST00000623853 1223 ntBASIC20.06■□□□□ 0.8
HTTP42858 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HTTP42858 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HTTP42858 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HTTP42858 TERF1P3-201ENST00000505638 1227 ntBASIC20.06■□□□□ 0.8
HTTP42858 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.06■□□□□ 0.8
HTTP42858 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HTTP42858 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.06■□□□□ 0.8
HTTP42858 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.06■□□□□ 0.8
HTTP42858 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 AC025580.3-201ENST00000617932 1424 ntBASIC20.06■□□□□ 0.8
HTTP42858 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HTTP42858 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.06■□□□□ 0.8
HTTP42858 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
HTTP42858 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
HTTP42858 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
HTTP42858 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 OR8S1-201ENST00000310194 1080 ntBASIC20.05■□□□□ 0.8
HTTP42858 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 CRYGEP-201ENST00000412192 528 ntBASIC20.05■□□□□ 0.8
HTTP42858 AC004790.2-201ENST00000623588 572 ntBASIC20.05■□□□□ 0.8
HTTP42858 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 AL121761.2-201ENST00000598007 1648 ntBASIC20.05■□□□□ 0.8
HTTP42858 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.05■□□□□ 0.8
HTTP42858 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HTTP42858 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.05■□□□□ 0.8
HTTP42858 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
HTTP42858 AL627223.1-201ENST00000416693 442 ntBASIC20.05■□□□□ 0.8
HTTP42858 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.05■□□□□ 0.8
HTTP42858 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HTTP42858 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.05■□□□□ 0.8
HTTP42858 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 AC096633.1-201ENST00000422446 749 ntBASIC20.05■□□□□ 0.8
HTTP42858 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 AC025678.2-201ENST00000562061 970 ntBASIC20.05■□□□□ 0.8
HTTP42858 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HTTP42858 AC008667.4-201ENST00000607370 168 ntBASIC20.05■□□□□ 0.8
HTTP42858 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.04■□□□□ 0.8
HTTP42858 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.04■□□□□ 0.8
HTTP42858 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.04■□□□□ 0.8
HTTP42858 FAM86GP-201ENST00000448322 971 ntBASIC20.04■□□□□ 0.8
HTTP42858 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
HTTP42858 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.04■□□□□ 0.8
HTTP42858 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.04■□□□□ 0.8
HTTP42858 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
HTTP42858 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HTTP42858 SIRPAP1-201ENST00000448467 1770 ntBASIC20.04■□□□□ 0.8
HTTP42858 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.04■□□□□ 0.8
HTTP42858 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.04■□□□□ 0.8
HTTP42858 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HTTP42858 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HTTP42858 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.03■□□□□ 0.8
HTTP42858 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms