Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 RCN1P2-201ENST00000398357 915 ntBASIC20.21■□□□□ 0.83
CIITAP33076 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 AL450487.1-201ENST00000426799 995 ntBASIC20.21■□□□□ 0.83
CIITAP33076 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.21■□□□□ 0.83
CIITAP33076 AC138894.3-201ENST00000603787 634 ntBASIC20.21■□□□□ 0.83
CIITAP33076 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.21■□□□□ 0.83
CIITAP33076 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.21■□□□□ 0.83
CIITAP33076 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.21■□□□□ 0.83
CIITAP33076 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.21■□□□□ 0.83
CIITAP33076 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CIITAP33076 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.21■□□□□ 0.83
CIITAP33076 INTS4P1-201ENST00000438455 1935 ntBASIC20.21■□□□□ 0.83
CIITAP33076 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.21■□□□□ 0.83
CIITAP33076 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CIITAP33076 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
CIITAP33076 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.21■□□□□ 0.83
CIITAP33076 NEFHP1-201ENST00000412845 2629 ntBASIC20.21■□□□□ 0.83
CIITAP33076 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CIITAP33076 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
CIITAP33076 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.2■□□□□ 0.82
CIITAP33076 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.2■□□□□ 0.82
CIITAP33076 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 AC007967.3-201ENST00000434308 558 ntBASIC20.2■□□□□ 0.82
CIITAP33076 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.2■□□□□ 0.82
CIITAP33076 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 AC096582.2-201ENST00000510860 516 ntBASIC20.2■□□□□ 0.82
CIITAP33076 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.2■□□□□ 0.82
CIITAP33076 MIR5100-201ENST00000579544 119 ntBASIC20.2■□□□□ 0.82
CIITAP33076 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.2■□□□□ 0.82
CIITAP33076 AL732292.2-201ENST00000609649 430 ntBASIC20.2■□□□□ 0.82
CIITAP33076 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.2■□□□□ 0.82
CIITAP33076 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.2■□□□□ 0.82
CIITAP33076 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CIITAP33076 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.2■□□□□ 0.82
CIITAP33076 AC010460.3-201ENST00000511359 1579 ntBASIC20.2■□□□□ 0.82
CIITAP33076 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.2■□□□□ 0.82
CIITAP33076 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CIITAP33076 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.2■□□□□ 0.82
CIITAP33076 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CIITAP33076 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CIITAP33076 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.19■□□□□ 0.82
CIITAP33076 AL390961.4-201ENST00000623958 2535 ntBASIC20.19■□□□□ 0.82
CIITAP33076 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
CIITAP33076 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 SLC25A6P5-201ENST00000435663 894 ntBASIC20.19■□□□□ 0.82
CIITAP33076 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.19■□□□□ 0.82
CIITAP33076 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.19■□□□□ 0.82
CIITAP33076 UNC93B7-201ENST00000509439 705 ntBASIC20.19■□□□□ 0.82
CIITAP33076 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.19■□□□□ 0.82
CIITAP33076 AC091304.2-201ENST00000564639 760 ntBASIC20.19■□□□□ 0.82
CIITAP33076 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.19■□□□□ 0.82
CIITAP33076 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CIITAP33076 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.19■□□□□ 0.82
CIITAP33076 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
CIITAP33076 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CIITAP33076 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.18■□□□□ 0.82
CIITAP33076 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.18■□□□□ 0.82
CIITAP33076 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.18■□□□□ 0.82
CIITAP33076 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.18■□□□□ 0.82
CIITAP33076 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CIITAP33076 COX5BP2-201ENST00000392354 334 ntBASIC20.18■□□□□ 0.82
CIITAP33076 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.18■□□□□ 0.82
CIITAP33076 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms