Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.46■□□□□ 0.23
MSX1P28360 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.46■□□□□ 0.23
MSX1P28360 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 TSPY22P-201ENST00000427496 604 ntBASIC16.46■□□□□ 0.23
MSX1P28360 CHCHD2P8-201ENST00000429873 447 ntBASIC16.46■□□□□ 0.23
MSX1P28360 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
MSX1P28360 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.46■□□□□ 0.23
MSX1P28360 RNF126P1-202ENST00000569893 925 ntBASIC16.46■□□□□ 0.23
MSX1P28360 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.46■□□□□ 0.23
MSX1P28360 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
MSX1P28360 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
MSX1P28360 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
MSX1P28360 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.46■□□□□ 0.23
MSX1P28360 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.46■□□□□ 0.23
MSX1P28360 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSX1P28360 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.46■□□□□ 0.22
MSX1P28360 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSX1P28360 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
MSX1P28360 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MSX1P28360 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 AC026471.1-201ENST00000564629 3026 ntBASIC16.45■□□□□ 0.22
MSX1P28360 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
MSX1P28360 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.45■□□□□ 0.22
MSX1P28360 GUSBP12-201ENST00000513727 720 ntBASIC16.45■□□□□ 0.22
MSX1P28360 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.45■□□□□ 0.22
MSX1P28360 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.45■□□□□ 0.22
MSX1P28360 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
MSX1P28360 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.45■□□□□ 0.22
MSX1P28360 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
MSX1P28360 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX1P28360 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX1P28360 KRT8P10-201ENST00000450021 1447 ntBASIC16.45■□□□□ 0.22
MSX1P28360 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
MSX1P28360 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
MSX1P28360 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX1P28360 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX1P28360 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
MSX1P28360 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
MSX1P28360 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.44■□□□□ 0.22
MSX1P28360 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.44■□□□□ 0.22
MSX1P28360 UNC93B7-201ENST00000509439 705 ntBASIC16.44■□□□□ 0.22
MSX1P28360 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.44■□□□□ 0.22
MSX1P28360 AC090616.6-201ENST00000582640 721 ntBASIC16.44■□□□□ 0.22
MSX1P28360 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.44■□□□□ 0.22
MSX1P28360 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.44■□□□□ 0.22
MSX1P28360 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.44■□□□□ 0.22
MSX1P28360 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX1P28360 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX1P28360 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms