Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.78■□□□□ 0.92
ERCC3P19447 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
ERCC3P19447 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
ERCC3P19447 LINC00602-201ENST00000629776 2065 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.77■□□□□ 0.92
ERCC3P19447 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.77■□□□□ 0.92
ERCC3P19447 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
ERCC3P19447 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.77■□□□□ 0.92
ERCC3P19447 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
ERCC3P19447 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.77■□□□□ 0.92
ERCC3P19447 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
ERCC3P19447 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.77■□□□□ 0.92
ERCC3P19447 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 AC093909.1-201ENST00000504731 1122 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 AC009533.2-201ENST00000543664 586 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.77■□□□□ 0.92
ERCC3P19447 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.77■□□□□ 0.92
ERCC3P19447 MTDHP3-201ENST00000594186 672 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 AL138831.2-201ENST00000606564 490 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 AP001269.4-201ENST00000609611 512 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 AC117500.6-201ENST00000624871 588 ntBASIC20.77■□□□□ 0.92
ERCC3P19447 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
ERCC3P19447 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ERCC3P19447 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
ERCC3P19447 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.77■□□□□ 0.91
ERCC3P19447 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
ERCC3P19447 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
ERCC3P19447 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
ERCC3P19447 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
ERCC3P19447 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 RBM17P3-201ENST00000417687 1192 ntBASIC20.76■□□□□ 0.91
ERCC3P19447 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
ERCC3P19447 MIR7706-201ENST00000613747 67 ntBASIC20.76■□□□□ 0.91
ERCC3P19447 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.76■□□□□ 0.91
ERCC3P19447 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.76■□□□□ 0.91
ERCC3P19447 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
ERCC3P19447 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 INTS4P1-201ENST00000438455 1935 ntBASIC20.76■□□□□ 0.91
ERCC3P19447 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ERCC3P19447 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.76■□□□□ 0.91
ERCC3P19447 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.76■□□□□ 0.91
ERCC3P19447 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
ERCC3P19447 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.76■□□□□ 0.91
ERCC3P19447 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 LINC01126-201ENST00000623515 1646 ntBASIC20.75■□□□□ 0.91
ERCC3P19447 AC009113.1-201ENST00000570267 2443 ntBASIC20.75■□□□□ 0.91
ERCC3P19447 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.75■□□□□ 0.91
ERCC3P19447 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 AC073648.2-201ENST00000510116 352 ntBASIC20.75■□□□□ 0.91
ERCC3P19447 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.75■□□□□ 0.91
ERCC3P19447 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
ERCC3P19447 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ERCC3P19447 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.75■□□□□ 0.91
ERCC3P19447 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ERCC3P19447 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms