Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.13■□□□□ 0.33
SDC1P18827 AC034232.1-201ENST00000506026 1064 ntBASIC17.13■□□□□ 0.33
SDC1P18827 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.13■□□□□ 0.33
SDC1P18827 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 AC108860.2-201ENST00000562760 2183 ntBASIC17.13■□□□□ 0.33
SDC1P18827 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SDC1P18827 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC1P18827 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SDC1P18827 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.13■□□□□ 0.33
SDC1P18827 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.12■□□□□ 0.33
SDC1P18827 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 AC066615.1-201ENST00000640911 628 ntBASIC17.12■□□□□ 0.33
SDC1P18827 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC1P18827 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC1P18827 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SDC1P18827 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 AC133963.1-201ENST00000504166 1679 ntBASIC17.11■□□□□ 0.33
SDC1P18827 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SDC1P18827 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC1P18827 RASA4DP-201ENST00000460726 1199 ntBASIC17.11■□□□□ 0.33
SDC1P18827 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SDC1P18827 AC010203.1-204ENST00000548782 407 ntBASIC17.11■□□□□ 0.33
SDC1P18827 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SDC1P18827 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.11■□□□□ 0.33
SDC1P18827 AC079602.3-201ENST00000623931 403 ntBASIC17.11■□□□□ 0.33
SDC1P18827 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC1P18827 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SDC1P18827 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SDC1P18827 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.11■□□□□ 0.33
SDC1P18827 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SDC1P18827 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC1P18827 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.1■□□□□ 0.33
SDC1P18827 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SDC1P18827 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.1■□□□□ 0.33
SDC1P18827 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC1P18827 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SDC1P18827 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.1■□□□□ 0.33
SDC1P18827 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.1■□□□□ 0.33
SDC1P18827 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC1P18827 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SDC1P18827 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC1P18827 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms