Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL6A3P12111 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL6A3P12111 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.57■□□□□ 0.56
COL6A3P12111 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.57■□□□□ 0.56
COL6A3P12111 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.57■□□□□ 0.56
COL6A3P12111 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.57■□□□□ 0.56
COL6A3P12111 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL6A3P12111 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.57■□□□□ 0.56
COL6A3P12111 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 AL139099.5-201ENST00000635274 300 ntBASIC18.57■□□□□ 0.56
COL6A3P12111 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
COL6A3P12111 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL6A3P12111 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A3P12111 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.56■□□□□ 0.56
COL6A3P12111 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.56■□□□□ 0.56
COL6A3P12111 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A3P12111 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.56■□□□□ 0.56
COL6A3P12111 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.56■□□□□ 0.56
COL6A3P12111 NAT9-224ENST00000583757 583 ntTSL 3 BASIC18.56■□□□□ 0.56
COL6A3P12111 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.56■□□□□ 0.56
COL6A3P12111 AL805961.1-202ENST00000641562 540 ntBASIC18.56■□□□□ 0.56
COL6A3P12111 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL6A3P12111 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A3P12111 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A3P12111 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.55■□□□□ 0.56
COL6A3P12111 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.55■□□□□ 0.56
COL6A3P12111 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.55■□□□□ 0.56
COL6A3P12111 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
COL6A3P12111 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
COL6A3P12111 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
COL6A3P12111 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A3P12111 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
COL6A3P12111 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A3P12111 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL6A3P12111 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL6A3P12111 AC112698.1-201ENST00000510299 916 ntBASIC18.55■□□□□ 0.56
COL6A3P12111 AC069120.2-201ENST00000524091 540 ntBASIC18.55■□□□□ 0.56
COL6A3P12111 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.55■□□□□ 0.56
COL6A3P12111 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.55■□□□□ 0.56
COL6A3P12111 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
COL6A3P12111 AC022144.1-201ENST00000602255 1580 ntBASIC18.55■□□□□ 0.56
COL6A3P12111 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.54■□□□□ 0.56
COL6A3P12111 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 AL592309.1-201ENST00000443127 649 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 RPS15P9-201ENST00000494093 319 ntBASIC18.54■□□□□ 0.56
COL6A3P12111 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
COL6A3P12111 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A3P12111 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A3P12111 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL6A3P12111 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A3P12111 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.54■□□□□ 0.56
COL6A3P12111 MIR4259-201ENST00000584466 101 ntBASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms